{
  "_id": "6a1f220bb401979e734207ac",
  "Package": "CodataGS",
  "Type": "Package",
  "Title": "Genomic Prediction Using SNP Codata",
  "Version": "1.43",
  "Date": "2019-05-17",
  "Author": "Lars Ronnegard",
  "Maintainer": "Lars Ronnegard <lrn@du.se>",
  "Description": "Computes genomic breeding values using external\ninformation on the markers. The package fits a linear mixed\nmodel with heteroscedastic random effects, where the random\neffect variance is fitted using a linear predictor and a log\nlink. The method is described in Mouresan, Selle and Ronnegard\n(2019) <doi:10.1101/636746>.",
  "License": "GPL",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-16 07:21:40 UTC",
    "User": "root"
  },
  "Repository": "https://larsronn.r-universe.dev",
  "Date/Publication": "2019-05-17 14:40:07 UTC",
  "RemoteUrl": "https://github.com/cran/CodataGS",
  "RemoteRef": "HEAD",
  "RemoteSha": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
  "MD5sum": "a6b72c1c47e292db3b1217d6f1675c4c",
  "_user": "larsronn",
  "_type": "src",
  "_file": "CodataGS_1.43.tar.gz",
  "_fileid": "2e8470625505cecdc50c8a4fbd9bbea76cc2b3704e7efb600ab2571122512cff",
  "_filesize": 120120,
  "_sha256": "2e8470625505cecdc50c8a4fbd9bbea76cc2b3704e7efb600ab2571122512cff",
  "_created": "2026-05-16T07:21:40.000Z",
  "_published": "2026-06-02T18:33:47.910Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79144430169,
      "time": 120,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7031551653"
    },
    {
      "job": 79144429745,
      "time": 110,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031550924"
    },
    {
      "job": 79144429909,
      "time": 140,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7031551808"
    },
    {
      "job": 79144430068,
      "time": 145,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031551217"
    },
    {
      "job": 79144428589,
      "time": 157,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031538935"
    },
    {
      "job": 79144428897,
      "time": 95,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7366575109"
    },
    {
      "job": 79144430016,
      "time": 78,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7031547440"
    },
    {
      "job": 79144429769,
      "time": 70,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7031546555"
    },
    {
      "job": 79144429857,
      "time": 81,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7031547608"
    }
  ],
  "_buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/CodataGS",
  "_commit": {
    "id": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
    "author": "Lars Ronnegard <lrn@du.se>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.43\n",
    "time": 1558104007
  },
  "_maintainer": {
    "name": "Lars Ronnegard",
    "email": "lrn@du.se",
    "login": "larsronn",
    "uuid": 70625922
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Matrix",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "larsronn",
      "count": 1,
      "uuid": 70625922
    }
  ],
  "_userbio": {
    "uuid": 70625922,
    "type": "user",
    "name": "larsronn"
  },
  "_downloads": {
    "count": 195,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CodataGS"
  },
  "_mentions": 1,
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/CodataGS.html",
    "extra/contents.json",
    "manual.pdf"
  ],
  "_realowner": "larsronn",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.43",
      "date": "2019-05-17"
    }
  ],
  "_exports": [
    "compute_GL",
    "compute_phitau",
    "genomicEBV.w.codata",
    "scaleZ"
  ],
  "_help": [
    {
      "page": "CodataGS-package",
      "title": "Genomic Prediction Using SNP Codata",
      "topics": [
        "CodataGS-package",
        "CodataGS"
      ]
    },
    {
      "page": "compute_GL",
      "title": "Computes genomic relationship matrix",
      "topics": [
        "compute_GL"
      ]
    },
    {
      "page": "compute_phitau",
      "title": "Computes models for the variance components",
      "topics": [
        "compute_phitau"
      ]
    },
    {
      "page": "genomicEBV.w.codata",
      "title": "Performs genomic prediction based on SNP codata.",
      "topics": [
        "genomicEBV.w.codata"
      ]
    },
    {
      "page": "hat.transf",
      "title": "Transforms hat values",
      "topics": [
        "hat.transf"
      ]
    },
    {
      "page": "MME",
      "title": "Mixed model equations",
      "topics": [
        "MME"
      ]
    },
    {
      "page": "scaleZ",
      "title": "Scales the genotype matrix.",
      "topics": [
        "scaleZ"
      ]
    },
    {
      "page": "summary.codataGS",
      "title": "Summary method for CodataGS objects",
      "topics": [
        "summary",
        "summary.CodataGS"
      ]
    },
    {
      "page": "Transform",
      "title": "Transforms hat values",
      "topics": [
        "Transform"
      ]
    }
  ],
  "_rundeps": [
    "lattice",
    "Matrix"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "codatags",
  "_universes": [
    "larsronn"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.43",
      "date": "2026-05-16T07:23:29.000Z",
      "distro": "noble",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "0a656436ce73a4ff3348f8249ade434c7f4ee387c91ae4a57dcd88632feb6c1a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.43",
      "date": "2026-05-16T07:23:24.000Z",
      "distro": "noble",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "2f5c1f3bd7b447b1507001a8aded7a4949a0ca78957601e77f2618b0b7b7e5e5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.43",
      "date": "2026-05-16T07:23:41.000Z",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "c0aa324ebd1dcd0fa104566bdf40a69a6c1a99b91997f56cbe6547b550c15513",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.43",
      "date": "2026-05-16T07:23:30.000Z",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "cf4831fd8fc0a1a9a3078c061cce2e34a6b58afac281c17a31d199c06c0fd9c7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.43",
      "date": "2026-05-16T07:22:45.000Z",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "4c6f9af78646b8b6345d4d791d2d109e96415380ec49e1edc7c6643c7a3eb0f1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.43",
      "date": "2026-05-16T07:22:39.000Z",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "069fd53bcf60d03a0a5c7f2ba0301ab8042f4afc60fbc2d804a219a4e6eb8627",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.43",
      "date": "2026-05-16T07:22:47.000Z",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "96f0af1ccddb4fb07af31f8bf27d22cb5d085a5d0ea6382edbe5157c2a8a2537",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.43",
      "date": "2026-06-02T18:33:30.000Z",
      "commit": "86c42d095b486bb0ef550e568baded3d1f4e3ad8",
      "fileid": "f41e3e652f36490d1494b8d36817bc27a9ef30b4ae3b5c162dc6941a1258c010",
      "status": "success",
      "buildurl": "https://github.com/r-universe/larsronn/actions/runs/25955977591"
    }
  ]
}